unmarked (version 0.11-0)

[-methods: Methods for bracket extraction [ in Package `unmarked'

Description

Methods for bracket extraction [ in Package `unmarked'

Usage

"["(x, i, j, drop)
"["(x, i, j, drop)
"["(x, i, j)
"["(x, i, j)
"["(x, i, j)
"["(x, i, j)
"["(x, i, j)
"["(x, i, j)
"["(x, i, j)

Arguments

x

Object of appropriate S4 class

i

Row numbers

j

Observation numbers (eg occasions, distance classes, etc...)

drop

Not currently used

Methods

x = "unmarkedEstimateList", i = "ANY", j = "ANY", drop = "ANY"

Extract a unmarkedEstimate object from an unmarkedEstimateList by name (either 'det' or 'state')

x = "unmarkedFit", i = "ANY", j = "ANY", drop = "ANY"

Extract a unmarkedEstimate object from an unmarkedFit by name (either 'det' or 'state')

x = "unmarkedFrame", i = "missing", j = "numeric", drop = "missing"

Extract observations from an unmarkedFrame.

x = "unmarkedFrame", i = "numeric", j = "missing", drop = "missing"

Extract rows from an unmarkedFrame

x = "unmarkedFrame", i = "numeric", j = "numeric", drop = "missing"

Extract rows and observations from an unmarkedFrame

x = "unmarkedMultFrame", i = "missing", j = "numeric", drop = "missing"

Extract primary sampling periods from an unmarkedMultFrame

x = "unmarkedFrame", i = "list", j = "missing", drop = "missing"

List is the index of observations to subset for each site.

x = "unmarkedMultFrame", i = "numeric", j = "missing", drop = "missing"

Extract rows (sites) from an unmarkedMultFrame

x = "unmarkedGMM", i = "numeric", j = "missing", drop = "missing"

Extract rows (sites) from an unmarkedFrameGMM object

x = "unmarkedGDS", i = "numeric", j = "missing", drop = "missing"

Extract rows (sites) from an unmarkedFrameGDS object

x = "unmarkedPCO", i = "numeric", j = "missing", drop = "missing"

Extract rows (sites) from an unmarkedFramePCO object

Examples

data(mallard)
mallardUMF <- unmarkedFramePCount(mallard.y, siteCovs = mallard.site,
	obsCovs = mallard.obs)
summary(mallardUMF)

mallardUMF[1:5,]
mallardUMF[,1:2]
mallardUMF[1:5, 1:2]